Kontakty Lidé

Lidé v RECETOX prof. Mgr. Jiří Damborský, Dr.

Profesor

Experimentální biologie

Kontakty:

e-mail:
tel.:+420 549 493 467

Publikace:


Originální práce v impaktovaných časopisech

Bidmanová, ., Chaloupková, R., Damborský, J., Prokop, Z: Development of Enzymatic Fiber-optic Biosensor for Detection of Halogenates Hydrocarbons, Analytical and Bioanalytical Chemistry, 2010 (398): 1861-1966

Biedermannova, L., Prokop, Z., Gora, A., Chovancova, E., Kovacs, M., Dambrosky, J., Wade R.C: A Single Mutation in a Tunnel to the Active Sit Changes the Mechanism and Kinetics of Product Release in Haloalkane Dehalogenase LinB, Journal of Biological Chemistry, 2012, 287: 29062–29074

Dokladal, L., Oboril, M., Zdrahal, Z., Ptackova, N., Chaloupkova, R., Damborsky, J., Kasparovsky, T., Jeandroz, S., Lochman, J: Physiological and Proteomic Approaches to Evaluate the Role of Sterol Binding in Elicitin-Induced Resistance, Journal of Experimental Botany, 2012 (63): 2203-2215.

Drienovska, I., Chovancova, E., Koudelakova, T., Damborsky, J., Chaloupkova, R.: Biochemical Characterization of a Novel Haloalkane Dehalogenase from a Cold-Adapted Bacterium, Applied and Environmental Microbiology, 2012, 78 (14): 4995-4998

Hasan, K., Fortova, A., Koudelakova, T., Chaloupkova, R., Ishitsuka, M., Nagata, Y., Damborsky, J., Prokop, Z.: Biochemical Characteristics of the Novel Haloalkane Dehalogenase DatA Isolated from the Plant Pathogen Agrobacterium tumefaciens C58, Applied and Environmental Microbiology, 2011, 77: 1881-1884

Chaloupkova, R., Prokop Z., Sato Y., Nagata Y., Damborsky J.,: Stereoselectivity and Conformational Stability of Haloalkane Dehalogenase DbjA from Bradyrhizobium japonicum USDA110: The Effect of pH and Temperature, FEBS Journal, 2011 (278): 2728-2738

Chovancova, E., Pavelka, A., Benes, P., Strnad, O., Brezovsky, J., Kozlikova, B., Gora, A., Sustr, V., Klvana, M., Medek, P., Biedermannova, L., Sochor, J., Damborsky, J.,: CAVER 3.0: A Tool for Analysis of Transport Pathways in Dynamic Protein Structures, PLoS Computational Biology, 2012, 8 (10)

Koudelakova, T., Chovancova , E., Brezovsky, J., Monincova, M., Fortova, A., Jarkovsky, J., and Damborsky, J: Substrate specificity of haloalkane dehalogenases, Biochem. J, 2011, 435: 00–00 (in press)

Koudelakova, T., Bidmanova, T., Dvorak, P., Pavelka, A.,Chaloupkova, R., Prokop, Z., Damborsky, J: Haloalkane Dehalogenases: Biotechnological Applications, Biotechnology Journal, 2013 (8): 32-45

Koudelakova, T., Chaloupkova, R., Brezovsky, J., Prokop, Z., Sebestova, E., Hessler, M., Khabiri, M., Plevaka, M., Kulik, D., Kuta-Smatanova, I., Rezacova, P., Ettrich, R., Bornscheuer, U. T.,Damborsky, J: Engineering protein resistance to organic co-solvent and elevated temperature by access tunnel modification, Angew. Chem. Int., 2013 (52): 1959-1963

Koudeláková, T., Chovancova, E., Brezovsky, J., Monincova, M., Fortova, A., Jarkovsky, J., Damborsky, J.: Substrate Specificity of Haloalkane Dehalogenases, Biochemical Journal, 2011, 435: 345-354

Lahoda, M., Chaloupkova, R., Stsiapanava, A., Damborsky, J., and Kuta Smatanova: Crystallization and crystallographic analysis of the Rhodococcus rhodochrous NCIMB 13064 DhaA mutant DhaA31 and its complex with 1,2,3-trichloropropane, Acta Cryst., 2011 ISSN 1744-3091, F67: 397–400

Martins dos Santos, V., Damborský, J.: Systems Biology at Work, Current Opinion in Biotechnology, 2010 (21): 498-501

Plesková, V., Kasparovský, T., Oboril, M., Ptácková , N., Chaloupková, R., Ladislav, D., Damborský , J., Lochman, J: Elicitinemembrane interaction is driven by a positive charge on the protein surface: Role of Lys13 residue in lipids loading and resistance induction, Plant Physiology and Biochemistry, 2011, 49: 321-328

Plesková, V., Kasparovsky, T., Oboril, M., Ptackova, N., Chaloupkova, R., Dokladal, L., Damborsky, J., Lochman, J.: Elicitin–membrane Interaction is driven by a Positive Charge on the Protein Surface: Role of Lys13 Residue in Lipids Loading and Resistance Induction, Plant Physiology and Biochemistry, 2011, 49: 321-328

Stsiapanava, A., Dohnálek, J., Gavira, J.A., Kutý, M., Koudeláková, T., Damborský, J., Kutá Smatanová, I: Atomic Resolution Studies of haloalkane dehalogenases DhaA04, DhaA14 and DhaA15 with engineered access tunnels, Acta Crystallographica, 2010 (D66): 962-969

Stsiapanava, A., Chaloupkova, R., Fortova, A., Brynda, J., Weiss, M. S., Damborsky, J., Kuta Smatanova, I.: Crystallization and Preliminary X-ray Diffraction Analysis of the Wild-Type Haloalkane Dehalogenase DhaA and its Variant DhaA13 Complexed with Different Ligands, Acta Crystallographica, 2011 ISSN 1744-3091, F67: 253-257

Monografie a kapitoly v odborných knihách

Bidmanová, ., Hrdličková, E., Koudeláková, T., Damborský, J., Prokop, Z: On-line Monitoring of Biodegradation Processes using Enzymatic Biosensors, Nojiri, H., Tsuda, M., Fukuda, M., Kamagata, Y., Biodegradative Bacteria Springer, Heidelberg 2012

Klánová, J., Bláha, L., Damborský, J., Klán, P., Dušek, L., Holoubek, I.: CETOCOEN project: From the Laboratory to the Field and Beyond, Hřebíček, J., Schimak, G., Denzer, R.: Environmental software systems Springer, Heidelberg 2011, ISBN 1868-4238, p. 491-499

Prokop, Z., Stepankova, V., Hasan, K., Chaloupkova, R., Damborsky, J.: Preparation of Optically Pure Haloalkanes and Alcohols by Kinetic Resolution using Haloalkane Dehalogenases, Whittall, J. (Ed) :Practical Methods in Biocatalysis and Biotransformations 2 John Wiley & Sons, 2012, 978-0-470-5192


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